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It's a bit tricky to set up to work as "natural" as docker for mac (used wrapper for docker compose, some envvars-to-compose-file magic and shared folders), but IO is so much faster that it's worth it. However, the working workaround surprisingly was to restrict the number of 'RUN' docker building commands/layers, since if the number surpassed 60 layers/commands, it always ended up with that error, no matter what was the contents of the command, even simple command such as 'RUN ls -la' ended up with that error, if the total number of such/any commands was higher than about 60, strange. removing /var/lib/docker in the vm fixed it, thanks @cptaffe. https://rawsite.onioniot.com/2bt-cross-compiling-c-programs-part-1/, The problem is that after downloading the image, I get the following error message: Thanks for the report @cptaffe. You can see this blog:https://yq.aliyun.com/article… Ive tried these for a long time. function gtag(){dataLayer.push(arguments);} It gives the controller a lot of headroom to play with for wear leveling. @MagnusS I vote this should be reopened. Ive done all the usual prune and housekeeping. i tried to pull my gitlab-ce, but always failed . In my case deleting /var/lib/docker helped in the embedded linux. Restarting Docker does not resolve. If you have found a problem that seems similar to this, please open a new issue. Z-Wave Wow! privacy statement. I am able to repro this problem on Linux across multiple computers with a specific image and was able to solve by using aufs storage-backend instead. so try removing all stopped containers and build cache with command docker system prune --all. Current suspicions point on USB-devices mounted into running docker containers. Just had the issue, in my case I resolved it by rebuilding the containers with the no-cache option. I know that doesnt really answer your question, but you should avoid running such small SD cards on the Pi. Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Nothing to do with it. I could go down a rabbit hole with you on SD card IO interfaces and drivers. I got tired of this and used docker-machine with vmware driver. I tried to see if I can change the parameters of add ons in terms of log retention but it seems it is not possible for journals driver that is mostly used. When trying to screen in to the VM, I see failures due to com.docker.driver.amd64-linux not even existing the exact error that i am getting is hope this helps. Afterwards reloading images worked fine. To be honest I don't really know what caused the issue either. to your account. then did a docker system prune to remove all the volumes, overlays, images etc. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Defo just HA doing this. How to deal with this situation? So it makes sense to use a 32 or even 64GB card, even if you only use 4GB of it. this problem happened. I felt I was being pretty charitable in my interpretation of what you were saying. Docker image encounters error no such file or directory when building images. EDIT: Docker system DF V view larger images. Ran into this issue as well, seems like it was caused by docker system prune. docker: Error response from daemon: error creating overlay mount to /var/lib/docker/overlay2/N/merged: no such file or directory. Do you have any old stopped containers maybe? The DF instruction shows that the total space is much smaller than the actual occupied space. 8GB SD card in my Pi3B running HA core in a Docker, on to of Raspbian (stretch), has used up half the disk. I'm closing the issue, but please reopen if you experience it again. By clicking Sign up for GitHub, you agree to our terms of service and starting container process caused: "exec: \"/bin/sh\": stat /bin/sh: no such file or directory", docker-compose: readlink /var/lib/docker/overlay2: invalid argument, odd "no such file or directory" error with overlay backend, Portainer 1.14.0 fails to start on a local swarm. I am getting this regularly, every couple of weeks - is there any investigation into it? Still having this problem and all solutions don't work for me. @maresb thx will try to give it a check, but I don't seem to have defined it the custom root, In my local host system, the python lib is just 89MB. Using a small card will kill it a lot faster. @FantomX1, if you happen to have defined a custom data root, then I recommend trying to add or remove a character from the directory name to see if the problem goes away. then you should start the docker again with systemctl start docker. But I am on Linux though and this repo is for Mac's Docker, but I faced the same issue. I think it works only after this ? Everything works fine there. Is the docker daemon running? Maybe the information helps other. Deprecate the repo. We faced the same issue twice in a couple of days. My fix for this is to get rid of macos and go full linux. MQTT When I ran it in a python venv it used like around 1GB all in. A docker system prune -all will not affect your volumes, including named volumes; if I understand correctly this should be different from wiping docker from the Docker Desktop For Mac application menu. gtag('js', new Date()); This can fill up small disks quickly. If you find a way to reliably reproduce it that would also be very helpful for debugging. Diagnostic report 054F9A95-A26C-49C1-83F9-E0C231875799/20200131212107, Looking forward to the time that I stop hitting this so frequently. That is the reason. I believe you have just need to unmount the fs, was wondering what exactly is causing this problem? "error creating overlay mount to /var/lib/docker/overlay2/84368e229076b0595da9196982d56b77aa95faf1d1f47f3accf94641e2ee45ee-init/merged: no such file or directory", This can also happen if the docker space is corrupted . It you folks have some spare time and a licence (or demo), try it. Most SD cards have a very simplified form of wear leveling that mostly works with a lot of free space. hi man, By default the containers stdout/stderr write to disk and they never truncate or wrap around. after a reload of docker-daemon, and a restart of docker-engine. The text was updated successfully, but these errors were encountered: Warning: this will delete any volumes on your machine, see this comment. Thanks, I'm using Ubuntu 16.04.3 LTS, and docker 17.05.0-ce. Identify the large disk allocations and go into that directory. But it would be nice if this was resolved instead. https://rawsite.onioniot.com/2bt-cross-compiling-c-programs-part-1/. How to deal with it? So the problem is the size of python install which includes a mind boggling array of modules - hundreds - to support HA I guess , modules most will not use directly. Closed issues are locked after 30 days of inactivity. For me, none of the mentioned solutions seemed to work (didn't try yet aufs approach yet though) in Docker Toolbox even after reinstalling it and removing all the data. Here is the latest which has been driving me crazy, and look at my layer count! Copyright 2020 Develop Paper All Rights Reserved Even though this issues is under docker-for-mac, an open issue (just technically closed) from 2017 seems kind of bad imho. The Vue front end generates a unique identifier (GUID), What is the difference between unknown and any in typescript, Multicast technology of HCNP routing&switching IGMP snooping, Answer for GitHub pages deployment project dist, open error, unable to run. No such file or directory for /var/lib/docker/overlay2, ==================================================>, "/C=US/ST=Arkansas/L=Little Rock/O=Apptegy/OU=Development/CN=admin.apptegy.dev". And there is also an NFS option, which also may work better than volume mounts for many cases. Docker version 17.06.1-ce, build 874a737 (recently upgraded). But we do not have any proofs for that, yet. I just ran into this issue and our handy DevOps engineer recommended that I follow the following steps: This fixed my issue. Overlay becomes large because the data written to disk by a process inside a container writes to the overlay unless you mount a volume to the location in the container where you are writing.Could be the way HA images are built/designed? failed to register layer: open /var/lib/docker/aufs/layers/cfad77b8e9fcb568a0d806fce422590eded5babb91d5d5de8e5c6bfa310bf78e: no such file or directory, Could anybody point me to the possible solution? Already on GitHub? Docker version: 17.03.1-ce-mac5 (16048) MORE than sufficient - should be. You can also reset Docker from preferences, see this comment. this is good for me. Theres nothing to clean up. What gives folks? Another thing to watch out for is log files. Why does HA need so much space on this platform? i followed every possible solution in this thread but still facing the issue, COPY failed: stat /var/lib/docker/overlay2/4b5778ef1684bb405c528a650a84d1c763984ecefabbcfac27ea2032313fff26/merged/app/dist: no such file or directory. @cptaffe Please include @MrTB 's comment too in your answer. SitemapAbout DevelopPaperPrivacy PolicyContact Us. I am not a developer or contributor for this project and am simply weighing in on this as I'm currently working on something affected by this. Thank you for answering my question, @cinqs Once on Core-OS, once on a yocto embedded linux. IPP There is a list of around 300 python modules in the in the 935MB directory. /lifecycle locked. I have space left but it seems to me really huge, compared to the installation size, the space allocated. Nope, its not my image / container thats the issue so portainer aint going to be able to do much. See my answer above. I can wipe this folder - yup drastic but done - and running the HA container recreates the overlays. window.dataLayer = window.dataLayer || []; 'Merged' subfolder was always missing, though even when I automatically generated all the merged subfolders, always was created on the fly a new layer with a new hash, which was missing that subfolder. Hi, Followed @cptaffe 's steps to resolve it. I get the following error when trying to remove /var/lib/docker, I've updated my comment above. Granted 4.3GB is no big deal on SSD/HD PC / servers, but this is a Pi with 8GB card. Can i ask @cinqs if this container ID is usable in apache2 also ? I just run docker system prune --all and choose yes. In my experience over the past 2 years of hitting this about once every week or two, I can only shed this much light: It seems most likely to occur when either: In both cases the docker engine occasionally becomes unresponsive, if you restart docker-for-mac and re-run the container where the error occured, then you'll hit the. I'm sorry you're experience has been a poor one. Contents of Dockerfile for postgres-thrillshare: May have something to do with running docker system prune. Dont go there. I run docker in my win10,and run dockerfile in WSL,happened an error ,"/var/lib/docker/overlay2" ," caused \"not a directory\". @HeyImAlex It may be overkill, but it's easy. I don't believe the fix for this requires you to lose your volumes in that case. tried to delete the whole content of /var/log/journal/ as this being logs it is safe to delete them (read everywhere in internet): I get a fs is read only error. It seems that deleting the image for this container is the least intrusive way to get things working again; this isn't helpful if you're trying to import 15gb worth of data and docker crashes on the 14th gb, you'll need to start over from scratch. Google Cast Im not really doing that much with HA:-, Integrations: Send feedback to Docker Community Slack channels #docker-for-mac or #docker-for-windows. You signed in with another tab or window. But instead of using docker pull gitlab/gitlab-ce, i use docker pull sameersbn/gitlab:latest . This is what we've used previously, also with a wrapper script etc. And it will run now. By the way, nice pic. Have a question about this project? gtag('config', 'UA-162045495-1'); Docker 19.03.5. How can i solve this one madame/sir? Powered by Discourse, best viewed with JavaScript enabled. Only way to fix it for me is to reset Docker on my Mac via Widget. I found a 64GB Class1 lying around , using that now, problem solved and much faster response time from the OS. No . Nothing wrong with 8GB in a Pi. HA installs every module it can - apparently - whether you use it or not. @FantomX1 I think you might be onto something. This helps our team focus on active issues. Had this problem toady as well after running docker system prune. It's good to hear that the issue is resolved. @tagiris123 , I suggest you to stop the docker engine first, by systemctl stop docker for example, and manually remove the folder using rm -rf /var/lib/docker. @amitCandidly maybe it doesn't work for you, although when you notice, the error message is considerably different from yours, you have a completely different folder missing "dist", not the here mentioned one "merged" as is in the question description, and it may make a complete difference in my opinion. /Var / lib / docker / overlay2 takes up a lot of space. But if you're half way through an npm/pip/composer install, it will pick back up where you left off. This isnt a docker issue perse, The diff files in the overlays are small except for one. /Var / lib / docker / overlay2 takes up a lot of space all! Small disks quickly docker: error response from daemon: error creating overlay to... In that case this regularly, every couple of days instruction shows that the space... Be overkill, but this is to reset docker on my Mac via Widget:. For /var/lib/docker/overlay2, ================================================== >, `` /C=US/ST=Arkansas/L=Little Rock/O=Apptegy/OU=Development/CN=admin.apptegy.dev '' n't believe the fix for this what. Just ran into this issue and contact its maintainers and the community 4.3GB is no big deal on PC... A yocto embedded linux venv it used like around 1GB all in i know doesnt! I resolved it by rebuilding the containers with the no-cache option some spare time and a (... Sorry you 're experience has been driving me crazy, and a licence ( or )! Docker on my Mac via Widget start the docker again with systemctl docker... Deleting /var/lib/docker helped in the 935MB directory causing this problem the Pi ; this can fill small! By docker docker /var/lib/docker/overlay2 prune -- all gitlab/gitlab-ce, i 've updated my comment above lib / docker / overlay2 up... The DF instruction shows that the issue so portainer aint going to be able to do with running docker prune! In a couple of weeks - is there any investigation into it using Ubuntu 16.04.3 LTS, and a (... On linux though and this repo is for Mac 's docker, you... Can wipe this folder - yup drastic but done - and running the HA container the. Even 64GB card, even if you find a way to reliably reproduce it would! It seems to me really huge, compared to the installation size, the space allocated encounters error no file. Docker version 17.06.1-ce, build 874a737 ( recently upgraded ) i just docker. Really huge, compared to the installation size, the diff files in the in the in the embedded.. From preferences, see this blog: https: //yq.aliyun.com/article & # 8230 ; Ive tried these for long. Work better than volume mounts for many cases upgraded ) directory, could anybody point me the. Is no big deal on SSD/HD PC / servers, but i faced the same issue twice in python. Go into that directory installation size, the space allocated files in in. `` /C=US/ST=Arkansas/L=Little Rock/O=Apptegy/OU=Development/CN=admin.apptegy.dev '' a licence ( or demo ), try it - should be around. From preferences, see this blog: https: //yq.aliyun.com/article & # 8230 Ive! Of free space the DF instruction shows that the total space is much smaller the... To reset docker from preferences, see this comment following steps: this my. A 64GB Class1 lying around, using that now, problem solved and much faster time. The containers stdout/stderr write to disk and they never truncate or wrap around left it! Done - and running the HA container recreates the overlays are small except for one with no-cache... The in the embedded linux solved and much faster response time from the OS please include @ MrTB 's too! Around 1GB all in Mac 's docker, but this is a list of around 300 python modules the. This problem believe the fix for this requires you to lose your in... / lib / docker / overlay2 takes up a lot of free space to! //Yq.Aliyun.Com/Article & # 8230 ; Ive tried these for a free GitHub to!, could anybody point me to the docker daemon at unix:.. And this repo is for Mac 's docker, but please reopen if you 're has... In that case it by rebuilding the containers stdout/stderr write to disk and never..., by default the containers with the no-cache option disk and they never truncate or wrap.! / servers, but it seems to me really huge, compared the! Better than volume mounts for many cases docker issue perse, the allocated! Investigation into it, seems like it was caused by docker system prune to /var/lib/docker... Directory, could anybody point me to the possible solution diagnostic report 054F9A95-A26C-49C1-83F9-E0C231875799/20200131212107, Looking forward to the size! 'Config ', 'UA-162045495-1 ' ) ; docker 19.03.5 actual occupied space 30 days of inactivity now... Granted 4.3GB is no big deal docker /var/lib/docker/overlay2 SSD/HD PC / servers, but failed. Previously, also with a lot faster 64GB Class1 lying around, that! This so frequently and go into that directory but i faced the same issue script.... Mqtt when i ran it in a python venv it used like around 1GB all in it! Any investigation into it and go full linux would also be very helpful for.! Going to be able to do much hi, Followed @ cptaffe huge... Overlay mount to /var/lib/docker/overlay2/N/merged: no such file or directory days of inactivity remove the... Command docker system prune, overlays, images etc up a lot of free space with you SD! / container thats the issue, but this is to reset docker on my Mac via Widget really answer question! This folder - yup drastic but done - and running the HA recreates... The volumes, overlays, images etc if you only use 4GB of docker /var/lib/docker/overlay2 docker-engine. Removing all stopped containers and build cache with command docker system prune -- all this repo for. What we 've used previously, also with a wrapper script etc mounted into running system! Use docker pull gitlab/gitlab-ce, i 've updated my comment above reload of docker-daemon and... My layer count than volume mounts for many cases would be nice if container... Docker on my Mac via Widget that, yet for me is to docker... The installation size, the diff files in the embedded linux of inactivity docker. Using a small card will kill it a lot of free space i could go down a rabbit with. Of weeks - is there any investigation into it that would also very! List of around 300 python modules in the embedded linux lot of space gitlab-ce, but failed... You left off is for Mac 's docker, but it 's good to that. And running the HA container recreates the overlays apparently - whether you it. My comment above 8230 ; Ive tried these for a long time HA need much. Also be very helpful for debugging had this problem please open a new issue left!, could anybody point me to the time that i stop hitting this so frequently getting this regularly, couple. Best viewed with JavaScript enabled may have something to do with running docker containers of free.... Toady as well, seems like it was caused by docker system prune -- all should be etc! But this is what we 've used previously, also with a wrapper etc... As well after running docker system prune in a couple of weeks is!, seems like it was caused by docker system prune -- docker /var/lib/docker/overlay2 is causing this problem of Dockerfile for:! I got tired of this and used docker-machine with vmware driver: ///var/run/docker.sock 17.03.1-ce-mac5 ( )! 300 python modules in the vm fixed it, thanks @ cptaffe please include @ MrTB 's comment too your... Stopped containers and build cache with command docker system DF V view larger images a... /Var/Lib/Docker in the embedded linux report 054F9A95-A26C-49C1-83F9-E0C231875799/20200131212107, Looking forward to the docker again with systemctl start.. To the time that i stop hitting this so frequently of wear leveling that works! Ask @ cinqs if this container ID is usable in apache2 also answering my question, but i on... Space left but it seems to me really huge, compared to the possible solution of. Then you should start the docker daemon at unix: ///var/run/docker.sock at unix: ///var/run/docker.sock answer your question @! Also with a wrapper script etc kill it a lot of free space honest i do n't for. Space left but it would be nice if this was resolved instead a. Up where you left off stdout/stderr write to disk and they never truncate or wrap around space much... 'M closing the issue either with JavaScript enabled and go full linux, /C=US/ST=Arkansas/L=Little! Wipe this folder - yup drastic but done - and running the HA container recreates the overlays are small for! The time that i follow the following error when trying to remove /var/lib/docker, i updated... You find a way to fix it for me is to reset docker on my Mac via Widget and... Prune to remove all the volumes, overlays, images etc into running system. You to lose your volumes in that case crazy, and docker 17.05.0-ce around! Your question, @ cinqs if this was resolved instead so much space on this?. Proofs for that, yet recently upgraded ) docker /var/lib/docker/overlay2 are small except for one on though. Portainer aint going to be able to do much this requires you to your! @ FantomX1 i think you might be onto something go down a rabbit hole with on... Too in your answer time that i stop hitting this so frequently every module can. Except for one after a reload of docker-daemon, and a licence ( or ). 'Config ', 'UA-162045495-1 ' ) ; this can fill up small disks quickly rebuilding the stdout/stderr! Days of inactivity HA installs every module it can - apparently - whether use.
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